ABySS-Explorer Activation Key For PC [Latest 2022]
Introduction
ABySS-Explorer is a Java application that uses a novel graph-based representation to display a sequence assembly
and associated meta data.
The tool was designed with the ABySS sequence assembler in mind and was motivated by the need to examine assembly structure,
in particular contig connectivity and supporting paired-end read relationships.
Aim
ABySS-Explorer's aims are to give a simple (but rich) interface to explore assembly structure, identify contig
overlaps, detect assembly errors, quickly examine contig names, and find alignment and paired-end read relationships.
Features
Graph-based Representation
ABySS-Explorer uses a graph-based representation to display the assembly graph.
Eulerian Paths
ABySS-Explorer uses Eulerian paths (i.e. paths that start and finish at the same vertex) to represent edges.
The edges form the vertices of the graph.
All vertices are labelled by contigs and original sequence reads.
Edges can be labelled by up to three contigs and up to four original sequence reads.
Edges can be directed or undirected.
Edges can be set to have a fixed length, a fixed weight, or randomly assigned a length and weight.
Eulerian paths are indicated by red arrows.
Read Nodes
ABySS-Explorer has read nodes for any original sequence reads in the assembly graph.
Nodes are coloured by chromosome and depth of coverage.
Read Nodes can be placed anywhere in the graph (i.e. not just on vertices) and the colour of the read node indicates
its chromosome and depth of coverage.
Edges connecting read nodes to contigs (i.e. contig nodes) can be set to have a fixed length or randomly assigned a length and weight.
Contig Nodes
Contig nodes are coloured by length.
Contig nodes can be placed anywhere in the graph.
Contig nodes can be labelled.
Contig nodes can be visually connected by placing read nodes between them.
Contig connections can be directed or undirected.
Contig nodes can be joined by an edge, which can be set to have a fixed length or randomly assigned a length and weight.
Read Nodes
Read nodes can be placed anywhere in the assembly graph (i.e. not just on vertices) and labelled by read ID.
Read nodes
ABySS-Explorer Crack Incl Product Key X64
ABySS-Explorer is an interactive Java application that employs a novel graph-based representation to display a sequence assembly and associated meta data.
The tool was designed with the ABySS sequence assembler in mind and was motivated by the need to examine assembly structure, in particular contig connectivity and supporting paired-end read relationships.
Now you can make use of this handy and easy to use sequence assembly viewer.
Features:
* Interactive graphical display
* Graph-based representation of sequence assembly structure
* Links between contigs and supporting reads
* Filtering by contig or read type
* View variant contigs
* View mapping reads
* Connection graph of contigs and reads
* Contig coloring based on assembly length
* Real-time updates of contigs and read connections
* Command line tool
ABySS-Explorer is an interactive Java application that employs a novel graph-based representation to display a sequence assembly and associated meta data.
The tool was designed with the ABySS sequence assembler in mind and was motivated by the need to examine assembly structure, in particular contig connectivity and supporting paired-end read relationships.
Now you can make use of this handy and easy to use sequence assembly viewer.
Features:
* Interactive graphical display
* Graph-based representation of sequence assembly structure
* Links between contigs and supporting reads
* Filtering by contig or read type
* View variant contigs
* View mapping reads
* Connection graph of contigs and reads
* Contig coloring based on assembly length
* Real-time updates of contigs and read connections
* Command line tool
ABySS-Explorer is an interactive Java application that employs a novel graph-based representation to display a sequence assembly and associated meta data.
The tool was designed with the ABySS sequence assembler in mind and was motivated by the need to examine assembly structure, in particular contig connectivity and supporting paired-end read relationships.
Now you can make use of this handy and easy to use sequence assembly viewer.
Features:
* Interactive graphical display
* Graph-based representation of sequence assembly structure
* Links between contigs and supporting reads
* Filtering by contig or read type
* View variant contigs
* View mapping reads
* Connection graph of contigs and reads
* Contig coloring based on assembly length
* Real-time updates of contigs and read connections
* Command line tool
ABy
f0d5c1b395

Related

Items